Search

Simple 'Google'-like searches can be performed by entering key words like 'ATP liver' in the text field.
Note that for simple searches, results will be also displayed e.g. for publications with 'liver' just in the title.
More sophisticated searches can be performed using the 'Advanced Search' tab. learn more


      
Advanced Search

  • enter search term(s) as free text (like Google)
  • press 'magnification glass' to start search
  • search results will be displayed below (scroll down ↓)
  • select entries (mark checkboxes)
  • if you want to export data, click the checkbox for each entry and finally click on the symbol in the upper right corner to proceed
To improve SABIO-RK data interoperability, semantic markup was added to web pages as described and defined by Bioschemas.
This structured information makes it easier to discover, collate and analyse our data.

SABIO-RK entry ranges

0001 - 1000 
1001 - 2000 
2001 - 3000 
3001 - 4000 
4001 - 5000 
5001 - 6000 
6001 - 7000 
7001 - 8000 
8001 - 9000 
9001 - 10000 
10001 - 11000 
11001 - 12000 
12001 - 13000 
13001 - 14000 
14001 - 15000 
15001 - 16000 
16001 - 17000 
17001 - 18000 
18001 - 19000 
19001 - 20000 
20001 - 21000 
21001 - 22000 
22001 - 23000 
23001 - 24000 
24001 - 25000 
25001 - 26000 
26001 - 27000 
27001 - 28000 
28001 - 29000 
29001 - 30000 
30001 - 31000 
31001 - 32000 
32001 - 33000 
33001 - 34000 
34001 - 35000 
35001 - 36000 
36001 - 37000 
37001 - 38000 
38001 - 39000 
39001 - 40000 
40001 - 41000 
41001 - 42000 
42001 - 43000 
43001 - 44000 
44001 - 45000 
45001 - 46000 
46001 - 47000 
47001 - 48000 
48001 - 49000 
49001 - 50000 
50001 - 51000 
51001 - 52000 
52001 - 53000 
53001 - 54000 
54001 - 55000 
55001 - 56000 
56001 - 57000 
57001 - 58000 
58001 - 59000 
59001 - 60000 
60001 - 61000 
61001 - 62000 
62001 - 63000 
63001 - 64000 
64001 - 65000 
65001 - 66000 
66001 - 67000 
67001 - 67054 


Overview   (go to Help / Information)
Highlighted Data:

0





Axes:



SPM full matrix


Appearance:

Color Scheme

PC, SPM: color by axis


Various:


Parallel Coordinates (PC)
Scatter Plot Matrix (SPM)
Show/hide
Select/highlight the subset of the data on one of the graphs. Number of highlighted data and the used attributes are visible on the top right side of the visualization tab.
By clicking on "Add Selection to Search" search is performed applying the selected criteria (highlighting) on the resulting data, thus refining the search.

The graphs can be manipulated and the data highlighted in the following ways:
Overview of the resulting data is given in the heat map:
* Sort per column (upwards, downwards) by clicking on the attribute's title, hold the "shift" key and drag the column to rearrange columns.
* Show/hide columns using Visible Overview Axes.
* Highlight individual values by clicking.
* Highlight ranges by brushing (range of the sorted column, marked with a green line).
* While brushing, the thin green line (extending from the thick one) shows the full range of the selected categories.

Parallel Coordinates (PC):
* Sort axis by double clicking on the axis title, rearrange axes by dragging.
* Show/hide axes using Visible PC Axes (maximum 7 in addition to the Index axis).
* Highlight ranges by brushing on different axes (more ranges on a single axis are possible).

Scatter Plot Matrix (SPM):
* Show/hide attributes (numerical ones) using Visible SPM Axes.
* Highlight range by brushing on one of the scatter plots.
* Histograms show the attribute value frequency (divided into 10 bins/columns).
* Full SPM matrix can be shown.

Additional Information:
* Highlighting data entries on one of the graphs highlights the same data on all other graphs.
* Details about selection can be viewed below in the Brush Info section.
* Reset highlighted values by using "Reset Highlighting".
* Index attribute is only the sequential numbering of the result and cannot be used for further searching.
* Different color schemes for the graphs can be selected.
* Which attribute is used for coloring PC and SPM axes can be manually selected, otherwise it changes upon sorting columns in Overview.
* Screenshots of the produced graphs can be downloaded together with the solr search expresion.
* Overview currently shows maximum 10000 data, PC and SPM maximum 300 (to not over clutter).
Brush Info