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Web Service ChangeLog

SABIO-RK ChangeLog
3.0 Date: Feb 2009 Ibatis+Spring frameworks to handle connections to the database. Shifted from Axis 1.4 to JAW-WS based Web services. Some input and output types have been changed. In addition, some methods have been renamed. Refer to the reference manual for details. SBML: Method for exporting SBML renamed to getSBML Level 2, Version 3, Release 2 (libSBML 3.2.0) is now supported New annotations have been added in the exported SBML. These include SBO annotations for Speies (Reactants & Products), Modifiers, Kinetic Law and Parameter types. The Species are now annotated with (unique) Sabio Compound IDs, whereas Enzymes are annotated to (unique) Sabio Species IDs (Parameters assigned to corresponding enzymes also have the enzyme's Sabio Species ID in their SBML Meta-ID). The reactions are annotated with unique Sabio Reaction IDs (also according to MIRIAM standard). MIRIAM annotations now updated from URIs to URNs (see MIRIAM for details). Possibility to export normalized (SI-base units) Parameter values, as well as the ones reported in the original publication Possibility to export reactions having no kinetic data, or to export reactions without kinetic data New methods added, now totalling 54. Refer to reference manual for details. Some bug fixes in existing methods.
2.0 Date: Mar 19, 2007 Revamped and redesigned access to the SABIO-RK Database. Please refer to the "Important Guideline" section of the reference manual for details. Some input and output types have been changed. Refer to the reference manual. New annotations added to the SBML output.
1.1.1 Date: Feb 21, 2007 Fixed bug: Search for compound and enzyme names conatining special characters. Updated affected methods: searchCompounds getReactionIDFromCompound getReactionIDFromEnzyme getCompoundID New method added: getMultipleCompoundIDs (!!Bug fix: The returned IDs ordered according to input (D'oh!) 28.02.2007!!) Fixed bug: A reaction can have multiple activators, inhibitors and cofactors. Return multiple entries instead of just one. Affected methods: getActivator getInhibitor getCofactor Corrected & updated reference manual descriptions
1.1.0 Date: Jan 30, 2007 Fixed bug: Malformed query. Updated affected methods: getOrganismfromKLID Axis upgrade (1.4) to support Python New methods added: getCompoundIDFromKEGGID getCompoundIDFromCHEBIID Updated Documentation with Perl access and sample code
1.0.0 Date: August, 2006 New methods added: getKEGGID getCHEBIID getSpeciedID getLocationID getLocationName getWildType getTissue GenerateSBMLentities Created sub-website for web service
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