News
COMBINE & ERASysAPP Tutorial
06-18-2014
COMBINE & ERASysAPP Tutorial
Modelling and Simulation of Biological Models
http://co.mbine.org/events/tutorial2014
Date: Sunday, September 14th, 2014 (9:00 - 18:00)
Venue: To be advised (in the vicinity of the ICSB venue)
Focus
Participants will learn setting-up computer models of biological networks and simulating them in different systems biology platforms, as well as using databases and applying modelling standards. Hands-on sessions, lectures and software demonstrations will be included providing attendees with the necessary skills.
Topics
- Model setup using different software tools and systems biology platforms
- Using experimental data for setting up quantitative models
- Parameter estimation, optimization and model fitting
- Simulation, analysis and visualization of biochemical models
- Database supported modelling: Integrated data management and model databases
- Community standards and formats for systems biology models
Standards (http://co.mbine.org/): CellML, SBGN, SBML, SED-ML
Databases: BioModels, JWS Online, Physiome Repository, SABIO-RK, SEEK
Modelling tools: CellDesigner, COPASI, OpenCOR, SBGN-ED, SYCAMORE, Virtual Cell
Target audience
Experimentalists and modellers with basic experience in modelling and simulation
Tutors (confirmed)
- Akira Funahashi and Noriko Hiroi: Keio University (Yokohama, Japan)
- Martin Golebiewski: Heidelberg Institute for Theoretical Studies (Germany)
- Mike Hucka: California Institute of Technology (Pasadena, CA, USA)
- Ursula Kummer and Jürgen Pahle: University of Heidelberg (Germany)
- Nicolas Le Novère: Babraham Institute (Cambridge, UK)
- Ion Moraru: University of Connecticut Health Center (Farmington, CT, USA)
- David Nickerson: Auckland Bioengineering Institute (New Zealand)
- Falk Schreiber: Monash University (Melbourne, Australia)
- Jacky Snoep: Stellenbosch University (South Africa)
- Natalie Stanford: University of Manchester (UK)
Tutorial coordinator
Martin Golebiewski
HITS gGmbH, Schloss-Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
Email: martin.golebiewski@h-its.org
